Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_0095Conserved hypothetical protein. (241 aa)    
Predicted Functional Partners:
atpF1
H+-transporting two-sector ATPase, B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.736
RPD_3101
Conserved hypothetical protein.
  
     0.730
RPD_1198
Protein of unknown function DUF1159.
  
     0.702
RPD_3359
Protein of unknown function DUF1321.
  
     0.659
RPD_4113
Hypothetical protein.
  
     0.658
RPD_3690
Conserved hypothetical protein.
  
     0.635
RPD_0996
Conserved hypothetical protein.
  
     0.631
RPD_3061
Conserved hypothetical protein.
 
    0.629
RPD_1405
Conserved hypothetical protein; Belongs to the UPF0335 family.
  
     0.604
RPD_1946
Protein of unknown function DUF1491.
  
     0.593
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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