STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0107Phosphoribosyltransferase. (272 aa)    
Predicted Functional Partners:
RPD_0152
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.860
RPD_3031
DNA processing protein DprA, putative.
 
 
 0.859
RPD_0405
Mg chelatase-related protein.
 
  
 0.808
RPD_1688
Conserved hypothetical protein.
   
    0.801
RPD_0105
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
     
 0.782
RPD_0104
Protein of unknown function DUF1178.
       0.770
RPD_0106
Glutaredoxin, GrxC; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.770
RPD_2840
ComEC/Rec2-related protein.
 
  
 0.730
RPD_0400
Protein of unknown function UPF0102; Belongs to the UPF0102 family.
 
    0.698
RPD_4102
Prephenate dehydrogenase.
   
  
 0.660
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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