Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_0127Methyltransferase type 12. (251 aa)    
Predicted Functional Partners:
RPD_0453
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
  
 0.438
RPD_1015
Monooxygenase, FAD-binding.
  
 0.438
RPD_1884
4-hydroxybenzoate 3-monooxygenase.
  
 0.438
RPD_2629
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
  
 0.438
RPD_3292
Salicylate 1-monooxygenase.
  
 0.438
RPD_1956
Penicillin V acylase precursor. Cysteine peptidase. MEROPS family C59.
  
     0.433
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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