Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0146MmgE/PrpD. (457 aa)    
Predicted Functional Partners:
RPD_2843
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.907
RPD_3697
Conserved hypothetical protein.
 
  
 0.897
RPD_3092
2,3-dimethylmalate lyase; Catalyzes the decarboxylation of oxaloacetate into pyruvate. Seems to play a role in maintaining cellular concentrations of bicarbonate and pyruvate; Belongs to the isocitrate lyase/PEP mutase superfamily. Oxaloacetate decarboxylase family.
 
  
 0.856
RPD_1745
Conserved hypothetical protein.
  
  
 0.832
RPD_0602
Carbamoyl-phosphate synthase L chain, ATP-binding.
  
    0.724
RPD_0988
Methylitaconate delta2-delta3-isomerase.
 
  
 0.723
RPD_1708
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.659
RPD_4054
Transcriptional regulator, XRE family.
  
  
 0.655
RPD_0606
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.653
RPD_0496
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.605
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (6%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.