Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_0158Murein endopeptidase. Metallo peptidase. MEROPS family M74. (317 aa)    
Predicted Functional Partners:
RPD_1406
Protein of unknown function DUF882.
  
     0.699
RPD_3702
Protein of unknown function DUF463, YcjX-like protein.
  
     0.618
RPD_3703
Conserved hypothetical protein 1620.
  
     0.611
RPD_4041
Ribonuclease T2; Belongs to the RNase T2 family.
  
     0.591
RPD_0902
ErfK/YbiS/YcfS/YnhG.
  
     0.487
RPD_0940
Conserved hypothetical protein.
 
     0.462
RPD_4246
ErfK/YbiS/YcfS/YnhG.
  
     0.460
RPD_2941
CreA.
  
     0.440
RPD_3040
Conserved hypothetical protein.
  
     0.438
RPD_1407
Peptidoglycan-binding domain 1.
 
     0.436
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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