Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0169Conserved hypothetical protein. (265 aa)    
Predicted Functional Partners:
RPD_2683
Ubiquinol-cytochrome C chaperone.
  
     0.524
RPD_2533
ETC complex I subunit conserved region.
  
     0.521
RPD_0421
Import inner membrane translocase, subunit Tim44.
  
     0.467
RPD_3349
Peptidase S1C, Do; Belongs to the peptidase S1C family.
 
  
 0.455
RPD_3325
Short-chain dehydrogenase/reductase SDR.
 
  0.451
RPD_2199
acyl-CoA dehydrogenase-like.
  
  0.437
RPD_4399
Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG).
 
     0.431
RPD_2011
Peptidase S1C, Do; Belongs to the peptidase S1C family.
 
  
 0.422
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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