Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPD_0180PTS IIA-like nitrogen-regulatory protein PtsN. (153 aa)    
Predicted Functional Partners:
RPD_0667
PTS IIA-like nitrogen-regulatory protein PtsN.
  
  
 
0.910
RPD_0347
6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.836
hpf
Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.831
RPD_0371
Phosphotransferase system, HPr.
 
  
 0.819
RPD_0178
Sigma-54 factor, core-binding region; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.801
RPD_0098
PTSINtr with GAF domain, PtsP; Belongs to the PEP-utilizing enzyme family.
  
   
 0.793
RPD_0370
PTS system fructose subfamily IIA component.
 
  
 0.760
RPD_4070
Transcriptional regulator, DeoR family.
 
  
 0.473
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
  
 0.421
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.409
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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