Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0248Conserved hypothetical protein. (164 aa)    
Predicted Functional Partners:
RPD_0799
Conserved hypothetical protein.
 
     0.813
RPD_0800
Protein of unknown function DUF81.
 
   
 0.793
RPD_0247
Nitrogen-fixing NifU-like.
     
 0.669
RPD_0285
Conserved hypothetical protein.
  
     0.654
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.605
RPD_3873
Protein of unknown function DUF526.
  
     0.588
RPD_0326
Conserved hypothetical protein.
  
     0.539
RPD_0378
Protein of unknown function DUF540.
  
   
 0.529
murJ
Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.
     
 0.523
fur-2
Ferric uptake regulator, Fur family; Belongs to the Fur family.
 
   
 0.507
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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