Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0260Perplasmic binding protein of ABC transporter. (373 aa)    
Predicted Functional Partners:
RPD_0258
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.981
RPD_0259
ABC transporter related.
 
 
 0.975
RPD_0114
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.840
RPD_0261
Creatininase.
 
     0.833
RPD_0256
Conserved hypothetical protein.
       0.776
RPD_0257
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
       0.775
RPD_2107
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.762
RPD_0113
ABC transporter related.
 
 
 0.734
RPD_2106
ABC transporter related.
 
 
 0.691
RPD_2184
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.663
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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