STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0270acyl-CoA dehydrogenase-like. (355 aa)    
Predicted Functional Partners:
RPD_0271
acyl-CoA dehydrogenase-like.
     0.937
RPD_3115
Conserved hypothetical protein.
 
 0.922
RPD_0807
3-hydroxyacyl-CoA dehydrogenase, NAD-binding; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.915
RPD_1264
acyl-CoA dehydrogenase-like.
     
  0.900
RPD_1858
Putative acetyl-CoA acetyltransferase.
 
 0.812
RPD_3318
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.801
RPD_0354
Enoyl-CoA hydratase.
  
 0.800
RPD_3611
Acetyl-CoA C-acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.800
RPD_0151
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.798
RPD_1908
Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.798
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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