Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0285Conserved hypothetical protein. (359 aa)    
Predicted Functional Partners:
RPD_0286
Cobalt chelatase, pCobT subunit.
       0.857
RPD_0799
Conserved hypothetical protein.
  
     0.668
RPD_0248
Conserved hypothetical protein.
  
     0.654
RPD_1391
Polysaccharide biosynthesis protein.
  
     0.616
RPD_0287
Hydrogenobyrinic acid a,c-diamide cobaltochelatase.
       0.597
RPD_1943
Conserved hypothetical protein.
  
     0.583
RPD_0310
Conserved hypothetical protein.
  
     0.569
RPD_3012
Sel1.
  
     0.532
RPD_2044
Conserved hypothetical protein.
  
     0.523
RPD_2000
Conserved hypothetical protein.
  
     0.520
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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