STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0331Conserved hypothetical protein. (169 aa)    
Predicted Functional Partners:
RPD_2770
Conserved hypothetical protein.
 
   
 0.703
RPD_4175
Conserved hypothetical protein.
  
  
 0.700
RPD_0332
LrgA.
  
    0.661
RPD_0333
LrgB-like protein.
       0.660
RPD_0145
Conserved hypothetical protein.
  
     0.568
RPD_0330
Putative ammonia monooxygenase.
       0.545
RPD_2017
Outer membrane autotransporter barrel.
  
  
 0.517
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
     0.478
RPD_2219
Conserved hypothetical protein.
 
  
 0.453
RPD_0267
Protein of unknown function DUF937.
 
     0.443
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.