STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0342HNH endonuclease. (185 aa)    
Predicted Functional Partners:
RPD_3940
Type IV secretory pathway VirD4 components-like.
   
 
 0.766
RPD_3881
Conserved hypothetical protein.
 
    0.548
RPD_1200
DNA adenine methylase CcrM; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.522
RPD_2791
Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
    0.486
RPD_1966
Phage portal protein, HK97.
  
  
 0.455
RPD_0343
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.440
RPD_4054
Transcriptional regulator, XRE family.
 
  
 0.421
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.