Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_0348UspA. (274 aa)    
Predicted Functional Partners:
RPD_0347
6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.556
RPD_0349
ChaB.
       0.468
RPD_1349
Conserved hypothetical protein.
 
  
 0.467
RPD_4219
OmpW.
 
  
 0.420
RPD_0383
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada.
  
  
 0.412
RPD_0909
methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.404
RPD_4087
methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.404
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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