Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0372Conserved hypothetical protein. (513 aa)    
Predicted Functional Partners:
RPD_3054
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like.
  
     0.767
RPD_1209
Hypothetical protein.
  
     0.755
RPD_1664
Conserved hypothetical protein.
 
     0.751
RPD_3425
Conserved hypothetical protein.
  
     0.728
RPD_0811
N/apple PAN precursor protein.
  
     0.671
RPD_3600
Hypothetical protein.
 
     0.598
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.595
RPD_4301
Conserved hypothetical protein.
  
     0.583
RPD_1924
Conserved hypothetical protein.
  
    0.576
RPD_4120
YdjC-like protein.
 
  
 0.565
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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