STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0403Autoinducer (acylhomoserine lactone) synthase. (218 aa)    
Predicted Functional Partners:
RPD_0402
Transcriptional regulator, LuxR family.
 
 
 0.989
RPD_2174
Regulatory protein, LuxR.
 
 
 0.967
RPD_2175
Autoinducer synthesis protein.
  
  
 
0.918
RPD_0404
Hypothetical protein.
       0.788
RPD_2373
Regulatory protein, LuxR.
  
  
 0.692
RPD_3391
Conserved hypothetical protein.
  
     0.606
RPD_1633
Conserved hypothetical protein.
  
     0.580
RPD_0405
Mg chelatase-related protein.
  
    0.515
RPD_3911
Conserved hypothetical protein.
  
     0.462
RPD_3427
Conserved hypothetical protein.
  
     0.449
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.