Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0435Conserved hypothetical protein. (186 aa)    
Predicted Functional Partners:
RPD_0434
DNA polymerase III, delta subunit.
 
    0.916
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.868
RPD_1372
Conserved hypothetical protein.
  
     0.723
RPD_3042
Conserved hypothetical protein.
  
     0.705
RPD_0414
Conserved hypothetical protein.
  
     0.690
RPD_1945
Peptidoglycan-binding domain 1.
  
     0.686
RPD_2063
Conserved hypothetical protein.
  
     0.674
RPD_2626
Invasion associated locus B.
  
     0.671
RPD_1692
Conserved hypothetical protein.
  
     0.661
RPD_0282
Conserved hypothetical protein.
  
     0.659
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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