Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_0437Diguanylate cyclase. (558 aa)    
Predicted Functional Partners:
RPD_1496
Response regulator receiver modulated diguanylate phosphodiesterase.
  
 0.899
RPD_0308
Diguanylate cyclase/phosphodiesterase.
 
  
 0.898
RPD_4076
Hpt sensor hybrid histidine kinase.
 
 
 0.870
RPD_0806
Signaling protein containing EAL domain.
  
 0.866
RPD_4230
Response regulator receiver modulated diguanylate phosphodiesterase.
 
  
 0.865
RPD_1497
Hpt sensor hybrid histidine kinase.
 
 
 0.835
RPD_3546
Uncharacterized domain HDIG.
 
 0.807
RPD_1003
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
  
 0.794
RPD_3846
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.765
RPD_4416
Response regulator receiver modulated metal dependent phosphohydrolase.
 
 
 0.763
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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