STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0602Carbamoyl-phosphate synthase L chain, ATP-binding. (1102 aa)    
Predicted Functional Partners:
RPD_2188
Allophanate hydrolase subunit 2.
 
0.984
RPD_2205
Carbamoyl-phosphate synthase L chain, ATP-binding.
 
0.968
RPD_3093
Carbamoyl-phosphate synthase L chain, ATP-binding.
 
0.968
RPD_0350
3-methylcrotonoyl-CoA carboxylase, alpha subunit.
 
0.967
RPD_2535
Carbamoyl-phosphate synthase L chain, ATP-binding.
 
0.967
RPD_2871
Biotin--acetyl-CoA-carboxylase ligase.
 
 
 0.932
RPD_1708
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.834
RPD_2811
Transketolase, central region; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.813
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 
 0.808
RPD_1927
methylmalonyl-CoA mutase.
  
  
 0.776
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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