Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0605Regulatory proteins, IclR. (243 aa)    
Predicted Functional Partners:
RPD_2188
Allophanate hydrolase subunit 2.
  
  
 0.918
RPD_2360
Regulatory proteins, IclR.
  
     0.763
RPD_0606
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
    0.700
RPD_0607
MaoC-like dehydratase.
 
    0.692
RPD_0608
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
     0.636
RPD_2636
Conserved hypothetical protein.
  
    0.598
RPD_0609
TRAP dicarboxylate transporter- DctP subunit.
 
     0.578
RPD_2635
Allophanate hydrolase subunit 2.
  
    0.563
RPD_0610
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
   
 0.549
RPD_0611
TRAP dicarboxylate transporter- DctM subunit.
 
     0.468
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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