Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_0607MaoC-like dehydratase. (150 aa)    
Predicted Functional Partners:
RPD_0606
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.954
RPD_0608
L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
 
 0.762
RPD_0605
Regulatory proteins, IclR.
 
    0.692
RPD_0496
Citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.660
RPD_0612
acyl-CoA dehydrogenase-like.
 
 0.640
RPD_0617
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.557
RPD_3256
Catalase.
   
 0.557
RPD_3695
acyl-CoA dehydrogenase-like.
 
 0.551
RPD_0270
acyl-CoA dehydrogenase-like.
 
 0.522
RPD_0613
acetyl-CoA hydrolase/transferase.
  
  
 0.516
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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