STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0672Multiple resistance and pH regulation protein F. (89 aa)    
Predicted Functional Partners:
RPD_0671
Na+/H+ antiporter subunit.
 
 
 0.999
RPD_0673
Cation antiporter.
 
 
 0.999
RPD_0675
NADH-ubiquinone oxidoreductase, chain 4L.
 
 
 0.999
RPD_0676
NADH dehydrogenase (quinone).
 
 
 0.999
RPD_0674
NADH dehydrogenase (quinone).
 
 
 0.998
RPD_3852
NADH dehydrogenase (quinone).
  
 
 0.955
RPD_3855
NADH dehydrogenase (quinone).
  
 
 0.953
nuoC
NADH dehydrogenase I, D subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
   0.908
RPD_1336
Proton-translocating NADH-quinone oxidoreductase, chain L.
 
 
 0.832
RPD_0653
NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.810
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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