Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0686Twin-arginine translocation pathway signal. (475 aa)    
Predicted Functional Partners:
RPD_2910
Twin-arginine translocation pathway signal.
  
     0.748
RPD_2294
Conserved hypothetical protein.
  
     0.667
RPD_3052
Conserved hypothetical protein.
  
     0.639
RPD_0687
Cytochrome P450.
       0.569
RPD_2693
Conserved hypothetical protein.
  
     0.569
RPD_0685
Protein of unknown function DUF894, DitE.
       0.549
RPD_2293
Conserved hypothetical protein.
  
     0.525
RPD_3561
Extracellular ligand-binding receptor.
  
     0.499
RPD_0796
Extracellular ligand-binding receptor.
  
     0.488
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.487
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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