Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_0700TonB-dependent siderophore receptor. (776 aa)    
Predicted Functional Partners:
RPD_0701
PepSY-associated TM helix.
 
  
 0.965
RPD_2354
TonB-dependent haem/haemoglobin receptor.
  
  
 0.670
RPD_4046
TonB-dependent receptor.
 
  
 0.646
RPD_3331
TonB-like.
 
 
 0.623
RPD_2823
PAAR.
    
 
 0.622
RPD_4002
TonB-like.
 
 
 0.619
RPD_2359
TonB-like.
 
 
 0.579
RPD_4148
Putative TolA.
 
 
 0.571
RPD_3065
TonB-dependent receptor.
 
  
 0.534
RPD_2482
TonB-dependent receptor.
  
   
 0.520
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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