STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0701PepSY-associated TM helix. (482 aa)    
Predicted Functional Partners:
RPD_0700
TonB-dependent siderophore receptor.
 
  
 0.964
RPD_2354
TonB-dependent haem/haemoglobin receptor.
 
  
 0.596
RPD_3335
TonB-dependent receptor, plug.
 
  
 0.566
RPD_3374
Conserved hypothetical protein.
 
     0.509
RPD_3650
Hypothetical protein.
  
     0.502
RPD_2866
Protein of unknown function DUF461.
  
    0.477
RPD_4401
OmpA-like transmembrane region.
  
     0.418
RPD_2476
Transcriptional regulator, ModE family.
 
   
 0.412
RPD_2936
GCN5-related N-acetyltransferase.
  
     0.407
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.