Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0702TRAP transporter solute receptor, TAXI family. (480 aa)    
Predicted Functional Partners:
RPD_3998
Conserved hypothetical protein.
  
     0.756
RPD_1641
Conserved hypothetical protein.
  
     0.742
RPD_1753
Acyltransferase 3.
  
     0.729
RPD_0954
Conserved hypothetical protein.
  
     0.695
RPD_3286
Conserved hypothetical protein.
  
     0.681
RPD_3601
Cyclic nucleotide-binding protein.
  
     0.680
RPD_1124
Conserved hypothetical protein.
  
     0.679
RPD_2702
Protein of unknown function DUF1211.
  
     0.674
RPD_3068
Conserved hypothetical protein.
  
     0.672
RPD_3425
Conserved hypothetical protein.
  
     0.667
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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