STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0707Alcohol dehydrogenase, zinc-binding. (324 aa)    
Predicted Functional Partners:
RPD_2249
MaoC-like dehydratase.
 
 0.773
RPD_3209
Aminoglycoside phosphotransferase.
 
   0.584
RPD_2972
Alcohol dehydrogenase GroES-like.
 
  
 0.543
RPD_0708
Conserved hypothetical protein.
       0.515
RPD_3495
Alcohol dehydrogenase GroES-like.
 
  
 0.498
RPD_3210
acyl-CoA dehydrogenase-like.
 
 
 0.448
RPD_0767
acyl-CoA dehydrogenase-like.
 
 
 0.422
RPD_1248
acyl-CoA dehydrogenase-like.
 
 
 0.422
RPD_2977
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.411
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.