STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0715Nuclease (SNase-like). (193 aa)    
Predicted Functional Partners:
RPD_0325
Conserved hypothetical protein.
  
    0.606
RPD_0716
Protein of unknown function DUF1674.
       0.559
RPD_3193
Methyltransferase type 11.
  
    0.558
RPD_0468
Conserved hypothetical protein.
  
     0.540
RPD_1753
Acyltransferase 3.
  
  
 0.517
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.516
RPD_4123
Conserved hypothetical protein.
  
     0.500
RPD_1692
Conserved hypothetical protein.
  
     0.494
RPD_3109
Multi-sensor signal transduction histidine kinase.
  
    0.493
RPD_1817
Conserved hypothetical protein.
 
     0.482
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.