Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0772Cytochrome P450. (459 aa)    
Predicted Functional Partners:
RPD_3694
Cytochrome P450.
  
   
 0.660
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.587
RPD_0803
Conserved hypothetical protein.
  
    0.562
RPD_1818
Conserved hypothetical protein.
 
 
 0.546
RPD_1828
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
  
 0.529
RPD_0773
Adenylyl cyclase class-3/4/guanylyl cyclase.
       0.504
RPD_2629
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase.
 
 
 0.498
RPD_1643
Ferredoxin.
 
 0.495
RPD_2554
Phosphoesterase, PA-phosphatase related.
  
 0.478
htpX
HtpX-2 peptidase. Metallo peptidase. MEROPS family M48B; Belongs to the peptidase M48B family.
   
   0.467
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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