Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0844ABC-3. (290 aa)    
Predicted Functional Partners:
RPD_0843
ABC transporter related.
 
 
 0.999
RPD_0845
Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
 0.999
RPD_0842
Hypothetical protein.
       0.857
RPD_0846
Cobalamin synthesis protein, P47K.
  
  
 0.595
RPD_0847
WD-40 repeat.
 
     0.592
fur-3
Zinc uptake regulator ZUR; Belongs to the Fur family.
  
  
 0.580
mntH
NRAMP family Mn2+/Fe2+ transporters; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
  
 0.532
RPD_0848
MgtC/SapB transporter.
     
 0.513
RPD_2560
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine.
  
 
 0.492
RPD_0177
ABC transporter related.
     
 0.470
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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