STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0845Periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family. (289 aa)    
Predicted Functional Partners:
RPD_0844
ABC-3.
  
 0.999
RPD_0843
ABC transporter related.
 
  
 0.997
RPD_0846
Cobalamin synthesis protein, P47K.
  
  
 0.821
RPD_0842
Hypothetical protein.
       0.793
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.731
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.715
RPD_0637
Cobalamin (vitamin B12) biosynthesis CobW.
  
  
 0.703
RPD_3725
Conserved hypothetical protein.
  
  
 0.673
RPD_0847
WD-40 repeat.
       0.635
RPD_0848
MgtC/SapB transporter.
     
 0.498
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.