Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0860High-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family. (389 aa)    
Predicted Functional Partners:
RPD_0859
Protein of unknown function DUF1007.
   
 0.992
RPD_0858
Peptidyl-dipeptidase Dcp. Metallo peptidase. MEROPS family M03A.
       0.813
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
       0.675
RPD_2659
Conserved hypothetical protein.
  
     0.637
RPD_3670
Flagellar export FliJ.
  
     0.594
RPD_0277
Peptidase M48, Ste24p.
  
     0.585
RPD_0857
Conserved hypothetical protein.
 
     0.568
RPD_0813
Invasion associated locus B.
  
   
 0.567
RPD_3269
Conserved hypothetical protein.
  
     0.538
RPD_1951
Conserved hypothetical protein.
  
     0.532
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.