Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0879Alpha/beta hydrolase fold. (273 aa)    
Predicted Functional Partners:
RPD_0880
2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme.
 
 
  0.938
RPD_0878
benzoate-CoA ligase.
 
   
 0.893
RPD_0881
benzoyl-CoA oxygenase, component B.
 
    0.875
aroK-2
Transcriptional regulator, XRE family with shikimate kinase activity; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
  
 0.860
RPD_1526
benzoate-CoA ligase.
 
   
 0.697
RPD_1534
benzoate-CoA ligase.
 
   
 0.662
RPD_1887
AMP-dependent synthetase and ligase.
 
   0.621
RPD_3607
AMP-dependent synthetase and ligase.
  
 
 
 0.602
RPD_3589
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
  
 0.452
RPD_0318
Protein of unknown function DUF6, transmembrane.
  
     0.432
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (16%) [HD]