STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0902ErfK/YbiS/YcfS/YnhG. (286 aa)    
Predicted Functional Partners:
RPD_3058
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.584
RPD_3702
Protein of unknown function DUF463, YcjX-like protein.
  
     0.508
RPD_0298
Protein of unknown function DUF949.
 
  
 0.505
RPD_0158
Murein endopeptidase. Metallo peptidase. MEROPS family M74.
  
     0.487
RPD_3703
Conserved hypothetical protein 1620.
  
     0.473
RPD_0813
Invasion associated locus B.
  
     0.469
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
       0.461
RPD_1406
Protein of unknown function DUF882.
 
     0.458
RPD_1407
Peptidoglycan-binding domain 1.
 
  
 0.438
RPD_0904
2-deoxycytidine 5-triphosphate deaminase.
 
     0.434
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.