Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPD_0924HhH-GPD. (243 aa)    
Predicted Functional Partners:
RPD_0383
DNA-O6-methylguanine--protein-cysteine S-methyltransferase / Transcriptional regulator Ada.
 
  
 0.713
RPD_0925
glutamyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.659
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.636
RPD_0442
Exodeoxyribonuclease III.
   
 0.567
RPD_0579
Exodeoxyribonuclease III (xth).
   
 0.567
RPD_2804
Exodeoxyribonuclease III.
   
 0.567
RPD_0909
methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.539
RPD_4087
methylated-DNA--protein-cysteine methyltransferase.
  
  
 0.539
RPD_0926
Histidine kinase.
  
    0.518
RPD_3595
DNA-N1-methyladenine dioxygenase.
     
 0.460
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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