Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0928Hypoxia induced protein conserved region. (79 aa)    
Predicted Functional Partners:
RPD_0929
ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.776
RPD_0927
Ribonuclease BN.
 
     0.764
RPD_3291
Conserved hypothetical protein.
  
     0.751
RPD_0792
Conserved hypothetical protein.
  
     0.750
RPD_3670
Flagellar export FliJ.
  
     0.703
RPD_0813
Invasion associated locus B.
  
     0.699
RPD_1952
Protein of unknown function DUF1214.
  
     0.699
RPD_0282
Conserved hypothetical protein.
  
     0.694
RPD_3279
Transglutaminase-like cysteine peptidase, BTLCP.
  
     0.686
RPD_2525
Invasion associated locus B.
  
     0.676
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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