Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_09394-carboxymuconolactone decarboxylase. (126 aa)    
Predicted Functional Partners:
RPD_4385
Conserved hypothetical protein.
    
 0.908
RPD_1884
4-hydroxybenzoate 3-monooxygenase.
 
   
 0.730
RPD_2210
Catechol 1,2-dioxygenase.
 
  
 0.717
RPD_0940
Conserved hypothetical protein.
       0.605
RPD_1204
Putative CoA transferase, subunit B.
 
  
 0.538
RPD_3299
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
  
 0.531
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.460
RPD_2437
1-Cys peroxiredoxin.
  
  
 0.424
RPD_0320
Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.418
RPD_1828
Phenylacetate-CoA oxygenase/reductase, PaaK subunit.
     
 0.400
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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