STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0967Peptidase S8 and S53, subtilisin, kexin, sedolisin. (321 aa)    
Predicted Functional Partners:
RPD_1979
Peptidase S1 and S6, chymotrypsin/Hap.
  
 0.626
RPD_2742
Collagen triple helix repeat.
 
 
 0.625
RPD_0968
TPR repeat.
  
    0.585
RPD_1421
Conserved hypothetical protein.
  
 
 0.575
RPD_2178
Hypothetical protein.
  
 
 0.575
RPD_2017
Outer membrane autotransporter barrel.
 
   
 0.490
RPD_2673
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.486
RPD_3739
Heme oxygenase (decyclizing).
  
     0.477
RPD_1436
ATPase, E1-E2 type.
   
 0.469
RPD_2092
MgtC/SapB transporter.
   
 0.469
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.