Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0970Conserved hypothetical protein. (258 aa)    
Predicted Functional Partners:
RPD_0972
Conserved hypothetical protein.
 
     0.904
RPD_0971
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.762
RPD_2025
Conserved hypothetical protein.
  
     0.503
RPD_2017
Outer membrane autotransporter barrel.
  
  
 0.496
RPD_3839
Conserved hypothetical protein.
  
     0.428
RPD_3290
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.