Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0975Conserved hypothetical protein. (257 aa)    
Predicted Functional Partners:
RPD_3111
NUDIX hydrolase.
  
     0.668
RPD_0614
VWA containing CoxE-like.
  
     0.652
RPD_0976
2-nitropropane dioxygenase, NPD.
       0.646
RPD_3316
Conserved hypothetical protein.
  
 
 0.622
RPD_0977
Conserved hypothetical protein.
       0.540
RPD_3609
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.514
RPD_2070
Thiamine pyrophosphate enzyme-like TPP-binding.
  
 0.481
RPD_3688
Thiamine pyrophosphate enzyme-like TPP-binding.
  
 0.479
RPD_0974
Conserved hypothetical protein.
       0.476
RPD_2249
MaoC-like dehydratase.
  
 
 0.468
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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