STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0983Protocatechuate 4,5-dioxygenase. (129 aa)    
Predicted Functional Partners:
RPD_0982
Protocatechuate 4,5-dioxygenase.
 
 0.999
RPD_0981
Oxidoreductase-like.
 
  
 0.996
RPD_0984
Amidohydrolase 2.
 
  
 0.994
RPD_1884
4-hydroxybenzoate 3-monooxygenase.
 
 
 0.957
RPD_0988
Methylitaconate delta2-delta3-isomerase.
 
  
 0.956
RPD_0987
Amidohydrolase 2.
 
   
 0.890
RPD_0986
Dimethylmenaquinone methyltransferase.
 
   
 0.886
RPD_3589
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
  
  
 0.522
RPD_0980
Conserved hypothetical protein.
       0.501
RPD_3586
HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.500
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.