STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_0984Amidohydrolase 2. (327 aa)    
Predicted Functional Partners:
RPD_0982
Protocatechuate 4,5-dioxygenase.
 
  
 0.994
RPD_0983
Protocatechuate 4,5-dioxygenase.
 
  
 0.994
RPD_0981
Oxidoreductase-like.
 
  
 0.991
RPD_0988
Methylitaconate delta2-delta3-isomerase.
 
  
 0.986
RPD_0986
Dimethylmenaquinone methyltransferase.
 
   
 0.922
RPD_0987
Amidohydrolase 2.
 
   
 0.921
RPD_1534
benzoate-CoA ligase.
  
  
 0.824
RPD_0878
benzoate-CoA ligase.
     
 0.802
RPD_1526
benzoate-CoA ligase.
     
 0.802
RPD_0151
Enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
  0.800
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.