Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPD_0989Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
RPD_0987
Amidohydrolase 2.
 
     0.720
RPD_0990
Twin-arginine translocation pathway signal.
       0.701
RPD_1550
LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.695
RPD_0986
Dimethylmenaquinone methyltransferase.
 
     0.683
RPD_0984
Amidohydrolase 2.
 
     0.640
RPD_0988
Methylitaconate delta2-delta3-isomerase.
  
  
 0.552
RPD_0875
Glutamate synthase (NADH) large subunit.
     
 0.523
RPD_0981
Oxidoreductase-like.
 
   
 0.520
RPD_0985
Putative dehydrogenase.
     
 0.511
RPD_0982
Protocatechuate 4,5-dioxygenase.
 
   
 0.510
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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