Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPD_1003Adenylyl cyclase class-3/4/guanylyl cyclase. (879 aa)    
Predicted Functional Partners:
RPD_3866
Two component transcriptional regulator, LuxR family.
 
 0.922
RPD_4076
Hpt sensor hybrid histidine kinase.
 
 
 0.802
RPD_0437
Diguanylate cyclase.
 
  
 0.794
RPD_3277
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.791
RPD_3109
Multi-sensor signal transduction histidine kinase.
 
 
 0.790
RPD_1005
Transcriptional regulator, Crp/Fnr family.
 
 
 0.781
RPD_0308
Diguanylate cyclase/phosphodiesterase.
 
 
 0.780
RPD_0119
Sensor histidine kinase with PAS/PAC.
  
 
 0.757
RPD_0284
PAS/PAC sensor hybrid histidine kinase.
  
 
 0.757
RPD_1700
Cell cycle control histidine kinase CckA.
  
 
 0.754
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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