Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1014Transcriptional regulator, MarR family. (170 aa)    
Predicted Functional Partners:
RPD_1015
Monooxygenase, FAD-binding.
 
  
 0.854
RPD_1016
Conserved hypothetical protein.
 
     0.778
RPD_1017
Beta-lactamase-like.
 
    0.747
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
   
 0.684
RPD_1019
Maleylacetoacetate isomerase.
 
   
 0.667
RPD_3061
Conserved hypothetical protein.
  
     0.487
RPD_2104
Substrate-binding region of ABC-type glycine betaine transport system.
  
  
 0.471
RPD_3795
Conserved hypothetical protein.
  
     0.447
RPD_3610
Transcriptional regulator, TetR family.
  
   
 0.446
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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