Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1044Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (285 aa)    
Predicted Functional Partners:
RPD_1046
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
RPD_1047
ABC transporter related.
 
 
 0.983
RPD_1048
ABC transporter related.
 
 
 0.981
RPD_1045
Twin-arginine translocation pathway signal.
 
    0.968
RPD_4290
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.967
RPD_3508
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.962
RPD_3862
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.959
RPD_4288
ABC transporter related.
 
 
 0.957
RPD_3506
ABC transporter related.
 
 
 0.950
RPD_3507
ABC transporter related.
 
 
 0.944
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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