STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1049Iron-containing alcohol dehydrogenase. (414 aa)    
Predicted Functional Partners:
RPD_2034
Alcohol dehydrogenase, zinc-binding; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 
 0.839
glgA
Glycogen/starch synthases, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
  
 0.786
RPD_2972
Alcohol dehydrogenase GroES-like.
  
 
 0.674
RPD_3495
Alcohol dehydrogenase GroES-like.
  
 
 0.674
RPD_0959
Pyruvate flavodoxin/ferredoxin oxidoreductase-like.
 
  
 0.647
RPD_1084
Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.559
RPD_1832
Phenylacetic acid degradation protein paaN.
  
 
 0.546
RPD_0958
Glutamate synthase (NADPH) small chain; Sulfide dehydrogenase (flavoprotein) subunit SudA / sulfide dehydrogenase (flavoprotein) subunit SudB.
 
   
 0.512
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.498
fbp
D-fructose 1,6-bisphosphatase.
     
 0.496
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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