Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1065HesB/YadR/YfhF; Belongs to the HesB/IscA family. (118 aa)    
Predicted Functional Partners:
RPD_1084
Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.962
RPD_1066
Conserved hypothetical protein.
 
 
   0.924
RPD_1068
NifZ.
 
  
 0.918
RPD_1067
LRV FeS4 cluster.
 
    0.900
RPD_3249
NifU-like protein.
  
 
 0.899
RPD_1070
NifT/FixU.
 
  
 0.882
RPD_1072
Conserved hypothetical protein.
 
  
 0.878
RPD_1069
Conserved hypothetical protein.
 
     0.868
RPD_1085
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 
 0.847
RPD_2455
Aminotransferase, class V.
 
 
 0.843
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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