Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPD_1082NifQ. (235 aa)    
Predicted Functional Partners:
RPD_1081
4Fe-4S ferredoxin, iron-sulfur binding.
 
  
 0.960
RPD_1085
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 0.956
RPD_2455
Aminotransferase, class V.
  
 0.948
RPD_1078
Dinitrogenase iron-molybdenum cofactor biosynthesis.
 
  
 0.942
RPD_1077
Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.921
RPD_1079
Protein of unknown function DUF269.
 
    0.914
RPD_1076
Nitrogenase MoFe cofactor biosynthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.912
RPD_1075
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.906
RPD_1074
Nitrogenase molybdenum-iron protein alpha chain.
 
  
 0.895
dnaK
Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.889
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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