Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPD_1083HesB/YadR/YfhF; Belongs to the HesB/IscA family. (106 aa)    
Predicted Functional Partners:
RPD_1084
Nitrogen-fixing NifU-like; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.990
RPD_1085
Aminotransferase, class V; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 
 0.945
RPD_1086
Alpha-isopropylmalate/homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.847
RPD_1238
Glycine cleavage T protein (aminomethyl transferase); Belongs to the GcvT family.
 
 
 0.760
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
  
 0.742
RPD_2455
Aminotransferase, class V.
 
 
 0.739
RPD_1082
NifQ.
 
 
 0.726
RPD_3249
NifU-like protein.
  
 
 0.717
RPD_1760
Glutaredoxin-related protein; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.601
RPD_0247
Nitrogen-fixing NifU-like.
  
 
 0.555
Your Current Organism:
Rhodopseudomonas palustris BisB5
NCBI taxonomy Id: 316057
Other names: R. palustris BisB5, Rhodopseudomonas palustris str. BisB5, Rhodopseudomonas palustris strain BisB5
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